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Best Square Payroll Alternatives (2026)

If Square Payroll isn't the right fit—because you're not on Square, need more HR features, or want a different ecosystem—these payroll alternatives offer strong options.

Read our Square Payroll review for full details on features, pricing, and pros and cons.

Quick answer

Who should switch and which alternative fits best.

Square Payroll fits businesses already using Square. Teams look for alternatives when they're not on Square, need more HR and benefits (Gusto, OnPay), or want different integrations. Gusto is the best all-in-one alternative. OnPay offers flat pricing. QuickBooks Payroll fits QuickBooks users; Patriot fits budget-conscious teams; Wave fits micro businesses.

Why people look for Square Payroll alternatives

Common reasons teams look for a change.

Not on Square

If you don't use Square for payments or POS, Square Payroll's main advantage is lost. Gusto and OnPay work with any accounting stack.

HR and benefits

Square Payroll focuses on payroll basics. Gusto and OnPay offer more HR, benefits, and PTO. Choose them if you need more than simple pay runs.

Integrations

Square is strongest within its own ecosystem. For deeper accounting or time-tracking integration, Gusto or QuickBooks Payroll may fit better.

Top Square Payroll alternatives

Editorially ranked alternatives we recommend.

all-in-one payroll and HR

Gusto

4.8

Free Trial

Free Plan

Integrations

Highlights

All-in-one payroll, benefits, and HR with transparent pricing and a modern interface. Strong for small businesses and contractors.

Gusto is our top pick for most small businesses and growing teams. It combines payroll, benefits, and HR in one platform with published pricing—no sales call required. Setup is straightforward, tax filing is automatic, and contractor support is built in. If you want a single place to run payroll, offer benefits, and manage onboarding, Gusto is the default choice.

value and flat pricing

OnPay

4.5

Free Trial

Free Plan

Integrations

Highlights

Straightforward payroll with flat pricing and no tier maze. Good for small teams that want simplicity and predictable costs.

OnPay stands out for value and clarity. One main plan, base-plus-per-person pricing you can see upfront, and solid payroll plus benefits without the complexity of tiered plans. It's a strong alternative to Gusto if you want similar ease of use with a simpler pricing structure. Support is included, and it works with any accounting software.

QuickBooks ecosystem

QuickBooks Payroll

4.6

Free Trial

Free Plan

Integrations

Highlights

Payroll that runs inside QuickBooks so your books and pay runs stay in one place. Ideal if you already use QuickBooks for accounting.

QuickBooks Payroll is the obvious fit when you already run your books in QuickBooks. Payroll posts to the right accounts and jobs with no sync or export, and labor cost flows straight into job costing. Pricing is competitive at entry, and the workflow is seamless for anyone who lives in QuickBooks. If you're not on QuickBooks, other options often offer better standalone value.

micro businesses

Wave Payroll

4.3

Free Trial

Free Plan

Integrations

Highlights

Payroll add-on paired with Wave’s free accounting. Fits solopreneurs and very small teams that want minimal cost and simple pay runs.

Wave pairs free accounting with a payroll add-on, which appeals to micro businesses and solopreneurs who want to keep monthly software cost low. It’s not as deep on HR and benefits as Gusto or Rippling—but for very small teams that already use Wave for books, it’s a practical path to run payroll without switching platforms.

Compare alternatives

Side-by-side at a glance.

SoftwareBest forStarting pricePayroll typesStandout featureReview
Square Payroll
businesses already using Square$35/moW-2, 1099Square integration; simplicityRead review
Gusto
all-in-one payroll and HR$49/moTransparent pricing; modern UXRead review
OnPay
value and flat pricing$40/moFlat pricing; one planRead review
QuickBooks Payroll
QuickBooks ecosystem$30/moSeamless QuickBooks integrationRead review
Patriot Payroll
budget payroll$17/moLow cost; simplicityRead review
Wave
micro businessesPayroll add-onFree accounting + payrollRead review

Detailed look at each alternative

When to choose each alternative.

Gusto

Best for all-in-one payroll and HR

Gusto offers more HR and benefits with published pricing. Best if you're not tied to Square and want a standalone payroll platform.

Read Gusto review · Compare

OnPay

Best for value and flat pricing

OnPay delivers flat pricing and straightforward payroll. Good for small teams that want predictability.

Read OnPay review

QuickBooks Payroll

Best for QuickBooks ecosystem

QuickBooks Payroll fits businesses that use QuickBooks for accounting. Payroll and books in one place.

Read QuickBooks Payroll review · Compare

Patriot Payroll

Best for budget payroll

Patriot offers low-cost payroll for very small teams. No ecosystem lock-in; good when cost is the priority.

Read Patriot Payroll review

Wave

Best for micro businesses

Wave provides free accounting and a payroll add-on. For solopreneurs and very small teams.

Read Wave review

How to choose the right alternative

What to look for when comparing options.

Payroll types (W-2 / 1099)

Most small businesses need both employees and contractors. Choose a platform that handles both with clear tax treatment and contractor self-service. Confirm 1099 support and e-file if you pay subcontractors.

Pricing transparency

Prefer published base-plus-per-person pricing when you can budget upfront. Custom-quote providers (e.g. ADP, Paychex) are fine if you want full-service; compare total cost at your headcount.

Tax automation and support

Full-service payroll should calculate, file, and deposit taxes. Confirm what's included and whether you want self-serve or hands-on support. Some providers charge extra for 1099 e-file.

HR and benefits

If you offer health insurance or 401(k), choose a provider that can run benefits and deductions in sync with payroll. Gusto and OnPay bundle this; ADP and Paychex offer it at scale.

Integrations

Payroll should connect to your accounting software (QuickBooks, Xero) and optionally time tracking. Native integration avoids manual export. Match the tool to your stack.

FAQs

Quick answers.